Occurrence record: AustralianBiologicalTissueCollection:ABTC69298.2

Material Sample of Pseudomys shortridgei (Thomas, 1907) | Heath Rat

API

Dataset

Data partner	OZCAM (Online Zoological Collections of Australian Museums) Provider
Data resource	South Australian Museum Adelaide provider for OZCAM
Institution code	South Australian Museum Supplied institution code "SAMA"
Collection	South Australian Museum Australian Biological Tissue Collection Supplied collection code "AustralianBiologicalTissueCollection"
Catalog number	ABTC69298.2
Other catalog numbers	["ecatalogue.irn:532716"]
Record type	Material Sample Supplied basis "MaterialSample"
Individual count	2
Associated Occurrence Status	Representative record
Associated occurrences	This record has 1 inferred associated occurrences For more information see Inferred associated occurrence details
License	CC-BY
Type	PhysicalObject
Presence/Absence	PRESENT Supplied as present
Relationship of resource	same individual
Associated records	REPRESENTATIVE
Country conservation	Endangered
Data generalizations	Record is Vulnerable in Western Australia. Generalised to 10km by WA DBCA.
Disposition	in collection
Dataset	[F-WAM26]
State conservation	Vulnerable

Event

Date precision	NOT_SUPPLIED

Taxonomy

Scientific name	Pseudomys shortridgei Supplied scientific name "Pseudomys shortridgei (Thomas, 1907)"
Identified to rank	species
Common name	Heath Rat
Kingdom	Animalia
Phylum	Chordata
Class	Mammalia
Order	Rodentia
Family	Muridae
Genus	Pseudomys
Species	Pseudomys shortridgei
Name match metric	exactMatch
Scientific name authorship	(Thomas, 1907)
Name parse type	SCIENTIFIC

Geospatial

Country	Australia
State or Territory	Western Australia
Latitude	-33.6 Supplied as: "-33.6"
Longitude	119.0 Supplied as: "119.0"
Datum	EPSG:4326
Coordinate precision	0.01
Coordinate uncertainty (in metres)	10000.0
Coordinates generalised	Due to sensitivity concerns, the coordinates of this record have been generalised: "Record is Vulnerable in Western Australia. Generalised to 10km by WA DBCA.".
Terrestrial	true
Biome	TERRESTRIAL
Marine	false
Country Code	AU

Additional properties

blocked	no
material sample type	tissue
preparation type	Heart
preservation temperature	-70 degrees Celsius
preservation type	Frozen
related resource catalog number	WAM:MAMM:M41908
source file	SAM-Tissues-DWC-CSV-Export-2412181800.csv

User flagged issues

Data quality tests

Test name	Result
Coordinate uncertainty meters invalid	Warning
Geodetic datum assumed WGS84	Warning
Show/Hide 86 passed properties
Ambiguous collection	Passed
Ambiguous institution	Passed
Basis of record badly formed	Passed
Collection match fuzzy	Passed
Collection not matched	Passed
CONTINENT_COORDINATE_MISMATCH	Passed
Continent country mismatch	Passed
Continent derived from coordinates	Passed
CONTINENT_DERIVED_FROM_COUNTRY	Passed
Continent invalid	Passed
Coordinates centre of country	Passed
Supplied coordinates centre of state	Passed
Coordinate invalid	Passed
Coordinates are out of range for species	Passed
Coordinate precision invalid	Passed
Coordinates converted to WGS84	Passed
Decimal latitude/longitude conversion failed	Passed
Coordinate reprojection suspicious	Passed
Coordinate rounded	Passed
Coordinates dont match supplied country	Passed
Country inferred from coordinates	Passed
Country invalid	Passed
Country mismatch	Passed
Different owner institution	Passed
Unrecognized geodetic datum	Passed
Individual count conflicts with occurrence status	Passed
Individual count invalid	Passed
Institution and Collection mismatch	Passed
Institution match fuzzy	Passed
Institution not matched	Passed
Interpretation error	Passed
Invalid scientific name	Passed
Location not supplied	Passed
Missing taxon rank	Passed
Modified date invalid	Passed
Modified date unlikely	Passed
Multimedia date invalid	Passed
Multimedia uri invalid	Passed
Name not supplied	Passed
Occurrence status inferred from basis of record	Passed
Occurrence status inferred from individual count	Passed
Occurrence status unparsable	Passed
Latitude is negated	Passed
Longitude is negated	Passed
Presumed swapped coordinate	Passed
SCIENTIFIC_NAME_AND_ID_INCONSISTENT	Passed
Sensitivity report invalid	Passed
Sensitivity report not loadable	Passed
Coordinates dont match supplied state	Passed
Taxon affinity species	Passed
TAXON_CONCEPT_ID_NOT_FOUND	Passed
Taxon confer species	Passed
Taxon default match	Passed
Taxon error	Passed
Taxon excluded	Passed
Taxon excluded associated	Passed
Taxon homonym	Passed
Taxon indeterminate species	Passed
Taxon match aggregate	Passed
Taxon match fuzzy	Passed
Taxon match higher rank	Passed
TAXON_MATCH_NAME_AND_ID_AMBIGUOUS	Passed
Taxon match none	Passed
TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED	Passed
Taxon misapplied	Passed
Taxon misapplied matched	Passed
Taxon parent child synonym	Passed
Taxon question species	Passed
Resource taxonomic scope mismatch	Passed
Taxon species plural	Passed
Coordinate precision and uncertainty transposed	Passed
Uncertainty not specified	Passed
Supplied country not recognised	Passed
Kingdom not recognised	Passed
Unrecognized collection code	Passed
Unrecognized institution code	Passed
Supplied coordinates are zero	Passed
Biosecurity issue	Passed
Suspected outlier	Passed
Geospatial issue	Passed
Habitat incorrect for species	Passed
Taxon misidentified	Passed
Taxonomic issue	Passed
Temporal issue	Passed
Other issue	Passed
Duplicate record	Passed
Show/Hide 7 missing properties
Missing collection date	Missing
Missing geodetic datum	Missing
Missing georeferenced by	Missing
Missing georeference protocol	Missing
Missing georeference sources	Missing
Missing georeference verification status	Missing
Missing georeference date	Missing
Show/Hide 29 tests that have not been run
Georeferenced after occurrence date	Unchecked (lack of data)
Identification date before occurrence date	Unchecked (lack of data)
First of the month	Unchecked (lack of data)
First of the year	Unchecked (lack of data)
First of the century	Unchecked (lack of data)
Footprint SRS invalid	Unchecked (lack of data)
Footprint WKT mismatch	Unchecked (lack of data)
Footprint WKT invalid	Unchecked (lack of data)
Recorded date mismatch	Unchecked (lack of data)
Recorded date invalid	Unchecked (lack of data)
Recorded date unlikely	Unchecked (lack of data)
TAXON_MATCH_SCIENTIFIC_NAME_ID_IGNORED	Unchecked (lack of data)
TAXON_MATCH_TAXON_ID_IGNORED	Unchecked (lack of data)
SCIENTIFIC_NAME_ID_NOT_FOUND	Unchecked (lack of data)
TAXON_ID_NOT_FOUND	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
Depth unlikely	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
Elevation unlikely	Unchecked (lack of data)
Min and max altitude reversed	Unchecked (lack of data)
Altitude value supplied in feet	Unchecked (lack of data)
Altitude value non-numeric	Unchecked (lack of data)
Identified date unlikely	Unchecked (lack of data)
Identified date invalid	Unchecked (lack of data)
Type status invalid	Unchecked (lack of data)
References uri invalid	Unchecked (lack of data)
Georeferenced date unlikely	Unchecked (lack of data)
Georeferenced date invalid	Unchecked (lack of data)

Outlier information

This record has been detected as an outlier using the Reverse Jackknife algorithm for the following layers:

Radiation - seasonality (Bio23) - CSIRO Ecosystem Sciences
Notes: Data derived using ANUCLIM v6 (beta) with the new set of climate surfaces (centred on 1990), by Dr. Kristen Williams.
Scale: 0.01 degree (~1km)
Moisture Index - highest quarter mean (Bio32) - CSIRO Ecosystem Sciences
Notes: Data derived using ANUCLIM v6 (beta) with the new set of climate surfaces (centred on 1990), by Dr. Kristen Williams.
Scale: 0.01 degree (~1km)

More information on the data quality work being undertaken by the Atlas is available here:

Inferred associated occurrence details

This record has been identified as the representative occurrence in a group of associated occurrences. This mean other records have been detected that seem to relate to this record and this particular record has the most detailed information on the occurrence. More information about the duplication detection methods and terminology in use is available here:

https://github.com/AtlasOfLivingAustralia/ala-dataquality/wiki/INFERRED_DUPLICATE_RECORD

Representative Record
Record UUID	d3264fd2-57f4-47c4-aafd-e158cbcddf15
Data Resource	South Australian Museum Adelaide provider for OZCAM
Raw Scientific Name	Pseudomys shortridgei (Thomas, 1907)
Coordinates	-33.6,119.0
Related records
Record UUID	f5e10f3b-f3cb-4cde-8bc7-197e9fbfc040
Data Resource	South Australian Museum Adelaide provider for OZCAM
Raw Scientific Name	Pseudomys shortridgei (Thomas, 1907)
Coordinates	-33.6,119.0

Additional political boundaries information

Area Management
CAPAD 2016 Terrestrial	Lake Magenta
CAPAD 2020 Terrestrial	Lake Magenta
CAPAD 2022 - Terrestrial (Collaborative Australian Protected Areas Database)	Lake Magenta
IBRA (Interim Biogeographic Regionalisation for Australia (IBRA) Version 7 (Regions)	Mallee
IBRA (Interim Biogeographic Regionalisation for Australia (IBRA) Version 7 (Subregions), contextual (polygon)	Western Mallee
NRM Regions 2010	Avon
NRM Regions 2017	Avon River Basin
Natural Resource Management (NRM) Regions 2023	Avon River Basin
Area management
National Landcare Program Management Units 2018	Avon River Basin
Biodiversity
IBRA 6 Regions	Mallee
IBRA 7 Regions	Mallee
IBRA 7 Subregions	Western Mallee
Hydrology
Australian Drainage Divisions 2021	South West Coast
Drainage Divisions Level 1	South West Coast
Drainage Divisions Level 2	ALBANY COAST
Indigenous
Indigenous Areas 2021	Kojonup - Gnowangerup
Indigenous Land Use Agreements	Wagyl Kaip & Southern Noongar Indigenous Land Use Agreement
Indigenous Locations 2021	Gnowangerup
Indigenous Regions 2021	South-Western WA
RATSIB (representative Aboriginal/Torres Strait Islander body) Areas 2024	South West
Land Management
Western Australian Biodiversity Science Research Priority Regions	South-West
Marine
States including coastal waters	Western Australia (including Coastal Waters)
Political
ASGS Australian States and Territories	Western Australia
Australian States and Territories	Western Australia
Commonwealth Electoral Divisions 2021	O'Connor
Local Government Areas 2011	Kent (S)
Local Government Areas 2012 deprecated	Kent
Local Government Areas PSMA 2018	SHIRE OF KENT
PSMA ABS Census Indigenous Language Speakers by Area - I01B (2016)	5
PSMA ABS Census Selected Person Characteristics by Indigenous Status by Area - I01A (2016)	392
PSMA ABS Greater Capital City Statistical Areas (2016)	REST OF WA
PSMA ABS SA2 Statistical Areas (2016)	GNOWANGERUP
PSMA ABS SA3 Statistical Areas (2016)	ALBANY
PSMA ABS SA4 Statistical Areas (2016)	WESTERN AUSTRALIA - WHEAT BELT
PSMA Commonwealth Electoral Boundaries (2018)	O'CONNOR
PSMA Indigenous Areas (2016)	KOJONUP - GNOWANGERUP
PSMA Indigenous Locations (2016)	GNOWANGERUP
PSMA Indigenous Regions (2016)	SOUTH-WESTERN WA
PSMA Remoteness Areas (2016)	Remote Australia
PSMA State Electoral Boundaries (2018)	AGRICULTURAL REGION
PSMA States (2016)	WESTERN AUSTRALIA
State Electoral Divisions 2022	Roe (Agricultural)
World Country Boundaries	Australia
Social
Australia 2021	Australia
Destination Zones 2021	Gnowangerup
Greater Capital City Statistical Areas 2021	Rest of WA
Local Government Areas 2023	Kent
Postal Areas 2021	6343
Remoteness Areas 2021	Remote Australia
States and Territories 2021	Western Australia
Statistical Areas Level 2	Gnowangerup
Statistical Areas Level 3	Albany
Statistical Areas Level 4	Western Australia - Wheat Belt
Tourism Regions 2021	Australia's South West
Vegetation
Australia's Indigenous forest estate (2013) v2.0	Non-Indigenous, Non forest
Forests of Australia (2013) v2.0	Non Forest
Forests of Australia 2018B	Eucalypt Mallee Woodland
NVIS 4.1 Major Vegetation Groups	Mallee Woodlands and Shrublands
NVIS 4.1 Major Vegetation Subgroups	Mallee with a dense shrubby understorey
Tenure of Australia's forests (2013) v2.0	Nature Conservation Reserve
Vegetation types - native	Mallee woodlands and shrublands
Vegetation types - present	Mallee woodlands and shrublands

Environmental sampling for this location

Biodiversity
Occurrence Density	240.0 frequency
Species Richness	140.0 frequency
Climate
Precipitation - annual (Bio12)	375.0 mm
Precipitation - coldest quarter (Bio19)	132.0 mm
Precipitation - driest period (Bio14)	4.0 mm
Precipitation - driest quarter (Bio17)	67.0 mm
Precipitation - seasonality (Bio15)	33.0 mm
Precipitation - warmest quarter (Bio18)	68.0 mm
Precipitation - wettest period (Bio13)	11.0 mm
Precipitation - wettest quarter (Bio16)	133.0 mm
Radiation - annual mean (Bio20)	17.9 MJ/m2/day
Radiation - seasonality (Bio23)	36.0
Radiation - warmest quarter (Bio26)	24.3 MJ/m2/day
Temperature - annual mean (Bio01)	15.4 degrees C
Temperature - annual range (Bio07)	24.0 degrees C
Temperature - coldest period min (Bio06)	4.9 degrees C
Temperature - coldest quarter mean (Bio11)	10.4 degrees C
Temperature - diurnal range mean (Bio02)	12.7 degrees C
Temperature - driest quarter mean (Bio09)	19.4 degrees C
Temperature - isothermality (Bio03)	0.53 %
Temperature - seasonality (Bio04)	1.38
Temperature - warmest period max (Bio05)	28.9 degrees C
Temperature - warmest quarter (Bio10)	20.5 degrees C
Temperature - wettest quarter mean (Bio08)	10.7 degrees C
WorldClim 2.1: Precipitation - annual	367.0 mm
WorldClim 2.1: Precipitation - coldest quarter	129.0 mm
WorldClim 2.1: Precipitation - driest month	15.0 mm
WorldClim 2.1: Precipitation - driest quarter	58.0 mm
WorldClim 2.1: Precipitation - seasonality	33.275066 mm
WorldClim 2.1: Precipitation - warmest quarter	64.0 mm
WorldClim 2.1: Precipitation - wettest month	44.0 mm
WorldClim 2.1: Precipitation - wettest quarter	131.0 mm
WorldClim 2.1: Temperature - annual mean	14.9875 °C
WorldClim 2.1: Temperature - annual range	22.2 °C
WorldClim 2.1: Temperature - coldest month min	5.0 °C
WorldClim 2.1: Temperature - coldest quarter mean	10.316667 °C
WorldClim 2.1: Temperature - diurnal range mean	11.925 °C
WorldClim 2.1: Temperature - driest quarter mean	19.7 °C
WorldClim 2.1: Temperature - isothermality	53.716213 %
WorldClim 2.1: Temperature - seasonality	390.1755
WorldClim 2.1: Temperature - warmest month max	27.2 °C
WorldClim 2.1: Temperature - warmest quarter mean	19.75 °C
WorldClim 2.1: Temperature - wettest quarter mean	11.25 °C
WorldClim: Temperature - isothermality	52.0 %
Substrate
Moisture Index - annual mean (Bio28)	0.33
Moisture Index - highest quarter mean (Bio32)	0.67
Elevation	365.0 m

Group	Field Name	Original Value	Processed Value


Classification	Scientific name	Pseudomys shortridgei (Thomas, 1907)	Pseudomys shortridgei
	Match type		exactMatch
	Phylum id		https://biodiversity.org.au/afd/taxa/065f1da4-53cd-40b8-a396-80fa5c74dedd
	Family id		https://biodiversity.org.au/afd/taxa/681ec45e-8530-43c5-961b-4e34c88083ab
	Taxon concept ID		https://biodiversity.org.au/afd/taxa/8c465f1e-1ff1-4d58-9c72-e9e79621525f
	Order	Rodentia	Rodentia
	Taxon rank id		7000
	Species id		https://biodiversity.org.au/afd/taxa/8c465f1e-1ff1-4d58-9c72-e9e79621525f
	Genus	Pseudomys	Pseudomys
	Left		53482
	Scientific name authorship		(Thomas, 1907)
	Taxon rank	species	species
	Genus id		https://biodiversity.org.au/afd/taxa/bb7b2387-2a0b-400d-a2da-bcaf1ffec957
	Name type		SCIENTIFIC
	Vernacular name		Heath Rat
	Order id		https://biodiversity.org.au/afd/taxa/985cb64a-33d2-44fe-b806-8aa848fdafdf
	Right		53482
	Kingdom		Animalia
	Specific epithet	shortridgei
	Class id		https://biodiversity.org.au/afd/taxa/e9e7db31-04df-41fb-bd8d-e0b0f3c332d6
	Phylum	Chordata	Chordata
	Class	Mammalia	Mammalia
	Species		Pseudomys shortridgei
	Family	Muridae	Muridae
	Kingdom id		https://biodiversity.org.au/afd/taxa/4647863b-760d-4b59-aaa1-502c8cdf8d3c
Event	Date precision		NOT_SUPPLIED
Occurrence	Associated occurrences		f5e10f3b-f3cb-4cde-8bc7-197e9fbfc040
	Individual count	2	2
	Duplication status		R
	Type		PhysicalObject
	Catalog number	ABTC69298.2
	Occurrence status	present	PRESENT
	Basis of record	MaterialSample	MATERIAL_SAMPLE
	Modified	16/07/2024	2024-07-16
	Relationship of resource	same individual
	Outlier for layers		[el887, el865]
	Collection code	AustralianBiologicalTissueCollection
	Duplicate status		REPRESENTATIVE
	Institution code	SAMA
	Country conservation		Endangered
	Data generalizations		Record is Vulnerable in Western Australia. Generalised to 10km by WA DBCA.
	Disposition	in collection
	Other catalog numbers	[ecatalogue.irn:532716]
	Dataset ID	[F-WAM26]
	State conservation		Vulnerable
Attribution	Data resource		South Australian Museum Adelaide provider for OZCAM
	Collection		South Australian Museum Australian Biological Tissue Collection
	License		CC-BY
	Data provider uid		dp20
	Provenance		Published dataset
	Data Resource ID	dr346	dr346
	Institution ID		in22
	Data partner		OZCAM (Online Zoological Collections of Australian Museums) Provider
	Institution		South Australian Museum
	Data hub uid	[dh1]
	Collection ID		co166
Location	Country	Australia	Australia
	Decimal latitude	-33.6	-33.6
	Terrestrial	true	true
	Decimal longitude	119.0	119.0
	State province	Western Australia	Western Australia
	Biome		TERRESTRIAL
	Coordinate uncertainty in meters		10000.0
	Lga	Kent (S)
	Marine	false	false
	Country code		AU
	Geodetic datum		EPSG:4326
	Coordinate precision	0.01	0.01

Search Specimens