Occurrence record: DNA Laboratory:Z25178

Material Sample of Crocidura Wagler, 1832 | Shrew recorded on 2013-09-18

API

Dataset

Data partner	OZCAM (Online Zoological Collections of Australian Museums) Provider
Data resource	Museums Victoria provider for OZCAM
Institution code	Museums Victoria Supplied institution code "NMV"
Collection	Museums Victoria DNA Laboratory Supplied collection code "DNA Laboratory"
Catalog number	Z25178
Occurrence ID	urn:lsid:ozcam.taxonomy.org.au:NMV:DNA Laboratory:MaterialSample:Z25178
Record type	Material Sample Supplied basis "MaterialSample"
Preparations	Tissue\|Frozen\|ethanol 70%\|Liver\|-80°C
Identified by	Kevin C. Rowe - Museum Victoria
Collector	Kevin C. Rowe - Museum Victoria
Sex	Female
Individual count	1
Life stage	Adult
License	CC0 Supplied as https://creativecommons.org/publicdomain/zero/1.0/legalcode
Rights holder	Museums Victoria
Institution ID	urn:lsid:biocol.org:col:34978
Related resource id	urn:lsid:ozcam.taxonomy.org.au:NMV:Mammalogy:PreservedSpecimen:C37522
Language	en
Type	PhysicalObject
Presence/Absence	PRESENT Supplied as present
Relationship of resource	same individual
Owner institution code	NMV
Sampling protocol	[trap]
Dataset / Survey name	[2013 Java Mount Salak]
Disposition	In collection
Date identified	2013-09-24 Supplied as 24/09/2013

Event

Dataset / Survey name	2013 Java Mount Salak
Occurrence date	2013-09-18 Supplied date "2013-09-18T00:00:00\2013-09-26T00:00:00"
Sampling protocol	trap
End day of year	261
Date precision	DAY
Start day of year	261

Taxonomy

Higher classification	Animalia \| Chordata \| Vertebrata \| Mammalia \| Laurasiatheria \| Eulipotyphla \| Erinaceota \| Soricidae \| Crocidurinae
Scientific name	Crocidura Supplied scientific name "Crocidura brunnea Jentink, 1888"
Identified to rank	genus Supplied as "Species"
Common name	Shrew Supplied common name "Thick-tailed White-toothed Shrew"
Kingdom	Animalia
Phylum	Chordata
Class	Mammalia
Order	Insectivora Supplied as "Eulipotyphla"
Family	Soricidae
Genus	Crocidura
Species	Crocidura brunnea
Name match metric	higherMatch
Scientific name authorship	Wagler, 1832 Supplied as Jentink, 1888
Name parse type	SCIENTIFIC
Nomenclatural code	ICZN

Geospatial

Country	Indonesia
State or Territory	West Java
Locality	Kabupaten Sukabumi, Kecamatan Cicurug, Desa Pasawahan, Mount Salak, Bajuri Camp
Latitude	-6.7305 Supplied as: "-6.7305"
Longitude	106.707 Supplied as: "106.707"
Datum	EPSG:4326 Supplied datum: "WGS84"
Verbatim locality	Kabupaten Sukabumi, Kecamatan Cicurug, Desa Pasawahan, Mount Salak, Bajuri Camp
Min elevation	1380
Coordinate precision	Unknown
Coordinate uncertainty (in metres)	650.0
Georeference sources	Collector
Georeference protocol	Centroid estimation
Terrestrial	true
Biome	TERRESTRIAL
Marine	false
Country Code	ID

Additional properties

blocked	Available for loan
material sample type	Tissue
preparation materials	ethanol 70%
preparation type	Liver
prepared by	Kevin C. Rowe - Museum Victoria
preservation date begin	2013-09-24T00:00:00
preservation temperature	-80°C
preservation type	ethanol 70%

User flagged issues

Data quality tests

Test name	Result
Recorded date invalid	Warning
Taxon match higher rank	Warning
Show/Hide 104 passed properties
Ambiguous collection	Passed
Ambiguous institution	Passed
Basis of record badly formed	Passed
Collection match fuzzy	Passed
Collection not matched	Passed
CONTINENT_COORDINATE_MISMATCH	Passed
Continent country mismatch	Passed
Continent derived from coordinates	Passed
CONTINENT_DERIVED_FROM_COUNTRY	Passed
Continent invalid	Passed
Coordinates centre of country	Passed
Supplied coordinates centre of state	Passed
Coordinate invalid	Passed
Coordinates are out of range for species	Passed
Coordinates converted to WGS84	Passed
Decimal latitude/longitude conversion failed	Passed
Coordinate reprojection suspicious	Passed
Coordinate rounded	Passed
Coordinate uncertainty meters invalid	Passed
Coordinates dont match supplied country	Passed
Country inferred from coordinates	Passed
Country invalid	Passed
Country mismatch	Passed
Different owner institution	Passed
Min and max altitude reversed	Passed
Altitude value non-numeric	Passed
Altitude value supplied in feet	Passed
Elevation unlikely	Passed
First of the century	Passed
First of the month	Passed
First of the year	Passed
Geodetic datum assumed WGS84	Passed
Unrecognized geodetic datum	Passed
Georeferenced after occurrence date	Passed
Identified date invalid	Passed
Identified date unlikely	Passed
Identification date before occurrence date	Passed
Individual count conflicts with occurrence status	Passed
Individual count invalid	Passed
Institution and Collection mismatch	Passed
Institution match fuzzy	Passed
Institution not matched	Passed
Interpretation error	Passed
Invalid scientific name	Passed
Location not supplied	Passed
Missing collection date	Passed
Missing geodetic datum	Passed
Missing georeferenced by	Passed
Missing georeference protocol	Passed
Missing georeference sources	Passed
Missing taxon rank	Passed
Modified date invalid	Passed
Modified date unlikely	Passed
Multimedia date invalid	Passed
Multimedia uri invalid	Passed
Name not supplied	Passed
Occurrence status inferred from basis of record	Passed
Occurrence status inferred from individual count	Passed
Occurrence status unparsable	Passed
Latitude is negated	Passed
Longitude is negated	Passed
Presumed swapped coordinate	Passed
Recorded date mismatch	Passed
Recorded date unlikely	Passed
SCIENTIFIC_NAME_AND_ID_INCONSISTENT	Passed
Sensitivity report invalid	Passed
Sensitivity report not loadable	Passed
Coordinates dont match supplied state	Passed
Taxon affinity species	Passed
TAXON_CONCEPT_ID_NOT_FOUND	Passed
Taxon confer species	Passed
Taxon default match	Passed
Taxon error	Passed
Taxon excluded	Passed
Taxon excluded associated	Passed
Taxon homonym	Passed
Taxon indeterminate species	Passed
Taxon match aggregate	Passed
Taxon match fuzzy	Passed
TAXON_MATCH_NAME_AND_ID_AMBIGUOUS	Passed
Taxon match none	Passed
TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED	Passed
Taxon misapplied	Passed
Taxon misapplied matched	Passed
Taxon parent child synonym	Passed
Taxon question species	Passed
Resource taxonomic scope mismatch	Passed
Taxon species plural	Passed
Coordinate precision and uncertainty transposed	Passed
Uncertainty not specified	Passed
Supplied country not recognised	Passed
Kingdom not recognised	Passed
Unrecognized collection code	Passed
Unrecognized institution code	Passed
Supplied coordinates are zero	Passed
Biosecurity issue	Passed
Suspected outlier	Passed
Geospatial issue	Passed
Habitat incorrect for species	Passed
Taxon misidentified	Passed
Taxonomic issue	Passed
Temporal issue	Passed
Other issue	Passed
Duplicate record	Passed
Show/Hide 2 missing properties
Missing georeference verification status	Missing
Missing georeference date	Missing
Show/Hide 16 tests that have not been run
Coordinate precision invalid	Unchecked (lack of data)
Footprint SRS invalid	Unchecked (lack of data)
Footprint WKT mismatch	Unchecked (lack of data)
Footprint WKT invalid	Unchecked (lack of data)
TAXON_MATCH_SCIENTIFIC_NAME_ID_IGNORED	Unchecked (lack of data)
TAXON_MATCH_TAXON_ID_IGNORED	Unchecked (lack of data)
SCIENTIFIC_NAME_ID_NOT_FOUND	Unchecked (lack of data)
TAXON_ID_NOT_FOUND	Unchecked (lack of data)
Depth value supplied in feet	Unchecked (lack of data)
Depth unlikely	Unchecked (lack of data)
Min and max depth reversed	Unchecked (lack of data)
Depth value non-numeric	Unchecked (lack of data)
Type status invalid	Unchecked (lack of data)
References uri invalid	Unchecked (lack of data)
Georeferenced date unlikely	Unchecked (lack of data)
Georeferenced date invalid	Unchecked (lack of data)

Additional political boundaries information

Political
World Country Boundaries	Indonesia

Environmental sampling for this location

Biodiversity
Occurrence Density	213.0 frequency
Species Richness	24.0 frequency
Climate
WorldClim 2.1: Precipitation - annual	3725.0 mm
WorldClim 2.1: Precipitation - coldest quarter	1135.0 mm
WorldClim 2.1: Precipitation - driest month	160.0 mm
WorldClim 2.1: Precipitation - driest quarter	563.0 mm
WorldClim 2.1: Precipitation - seasonality	28.643604 mm
WorldClim 2.1: Precipitation - warmest quarter	1082.0 mm
WorldClim 2.1: Precipitation - wettest month	419.0 mm
WorldClim 2.1: Precipitation - wettest quarter	1173.0 mm
WorldClim 2.1: Temperature - annual mean	16.358334 °C
WorldClim 2.1: Temperature - annual range	8.700001 °C
WorldClim 2.1: Temperature - coldest month min	11.9 °C
WorldClim 2.1: Temperature - coldest quarter mean	16.066668 °C
WorldClim 2.1: Temperature - diurnal range mean	6.8666673 °C
WorldClim 2.1: Temperature - driest quarter mean	16.233334 °C
WorldClim 2.1: Temperature - isothermality	78.9272 %
WorldClim 2.1: Temperature - seasonality	31.897085
WorldClim 2.1: Temperature - warmest month max	20.6 °C
WorldClim 2.1: Temperature - warmest quarter mean	16.75 °C
WorldClim 2.1: Temperature - wettest quarter mean	16.2 °C
WorldClim: Temperature - isothermality	85.0 %

Group	Field Name	Original Value	Processed Value


Classification	Scientific name	Crocidura brunnea Jentink, 1888	Crocidura
	Match type		higherMatch
	Phylum id		https://biodiversity.org.au/afd/taxa/065f1da4-53cd-40b8-a396-80fa5c74dedd
	Family id		https://biodiversity.org.au/afd/taxa/8392176b-7b64-4616-8885-9268b41bc9b2
	Taxon concept ID		https://biodiversity.org.au/afd/taxa/f1b62377-b2cd-40ee-8fef-a8f5310b0dab
	Order	Eulipotyphla	Insectivora
	Taxon rank id		6000
	Taxon identification issue	[RECORDED_DATE_INVALID]
	Genus	Crocidura	Crocidura
	Left		53598
	Higher classification	Animalia \| Chordata \| Vertebrata \| Mammalia \| Laurasiatheria \| Eulipotyphla \| Erinaceota \| Soricidae \| Crocidurinae
	Scientific name authorship	Jentink, 1888	Wagler, 1832
	Taxon rank	Species	genus
	Genus id		https://biodiversity.org.au/afd/taxa/f1b62377-b2cd-40ee-8fef-a8f5310b0dab
	Name type		SCIENTIFIC
	Vernacular name	Thick-tailed White-toothed Shrew	Shrew
	Nomenclatural code	ICZN
	Order id		https://biodiversity.org.au/afd/taxa/b5508d7c-b0dc-4a74-b66e-8daa457b2ca6
	Right		53600
	Kingdom	Animalia	Animalia
	Specific epithet	brunnea
	Class id		https://biodiversity.org.au/afd/taxa/e9e7db31-04df-41fb-bd8d-e0b0f3c332d6
	Phylum	Chordata	Chordata
	Class	Mammalia	Mammalia
	Family	Soricidae	Soricidae
	Kingdom id		https://biodiversity.org.au/afd/taxa/4647863b-760d-4b59-aaa1-502c8cdf8d3c
Event	Year	2013	2013
	End day of year		261
	Dataset / Survey name	[2013 Java Mount Salak]
	Month	9	9
	Date precision		DAY
	Start day of year		261
	Day	18	18
	Event date	2013-09-18T00:00:00\2013-09-26T00:00:00	2013-09-18
Identification	Date identified	24/09/2013	2013-09-24
Identification	Identified by	[Kevin C. Rowe - Museum Victoria]
Occurrence	Rights holder		Museums Victoria
	Institution ID	urn:lsid:biocol.org:col:34978
	Individual count	1	1
	Related resource id	urn:lsid:ozcam.taxonomy.org.au:NMV:Mammalogy:PreservedSpecimen:C37522
	Language	en
	Type		PhysicalObject
	Catalog number	Z25178
	Occurrence status	present	PRESENT
	Basis of record	MaterialSample	MATERIAL_SAMPLE
	Modified	2024-10-23T13:53:00	2024-10-23T13:53
	Relationship of resource	same individual
	Collection code	DNA Laboratory
	Occurrence ID	urn:lsid:ozcam.taxonomy.org.au:NMV:DNA Laboratory:MaterialSample:Z25178
	Owner institution code	NMV
	Sampling protocol	[trap]
	Preparations	Tissue\|Frozen\|ethanol 70%\|Liver\|-80°C
	Institution code	NMV
	Sex	Female	FEMALE
	Dataset / Survey name	[2013 Java Mount Salak]
	Disposition	In collection
	Recorded by	Kevin C. Rowe - Museum Victoria
	Life stage	Adult	{"concept": "Adult", "lineage": ["Adult"]}
Attribution	Data resource		Museums Victoria provider for OZCAM
	Collection		Museums Victoria DNA Laboratory
	License	https://creativecommons.org/publicdomain/zero/1.0/legalcode	CC0
	Data provider uid		dp20
	Provenance		Published dataset
	Data Resource ID	dr342	dr342
	Institution ID		in16
	Data partner		OZCAM (Online Zoological Collections of Australian Museums) Provider
	Institution		Museums Victoria
	Data hub uid	[dh1]
	Collection ID		co274
Location	Country	Indonesia	Indonesia
	Decimal latitude	-6.7305	-6.7305
	Terrestrial	true	true
	Locality	Kabupaten Sukabumi, Kecamatan Cicurug, Desa Pasawahan, Mount Salak, Bajuri Camp	Kabupaten Sukabumi, Kecamatan Cicurug, Desa Pasawahan, Mount Salak, Bajuri Camp
	Minimum elevation in meters	1380	1380.0
	Decimal longitude	106.707	106.707
	State province	West Java	West Java
	Verbatim locality	Kabupaten Sukabumi, Kecamatan Cicurug, Desa Pasawahan, Mount Salak, Bajuri Camp
	Biome		TERRESTRIAL
	Coordinate uncertainty in meters	650	650.0
	Marine	false	false
	Country code		ID
	Georeference protocol	Centroid estimation
	Geodetic datum	WGS84	EPSG:4326
	Georeference sources	Collector

Search Specimens

Occurrence record: DNA Laboratory:Z25178

Dataset

Event

Taxonomy

Geospatial

Additional properties

User flagged issues

Data quality tests

Additional political boundaries information

Environmental sampling for this location

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